NUCLEIC ACIDS

INTRODUCTION

-          Nucleic acids are energy molecules that derive metabolic processes in all cells.

-          These nucleic acids form our DNA, which is referred as our heredity material.

NUCLEOTIDE

-          It is the actual molecule that makes up our DNA (deoxyribonucleic acid) and RNA (ribonucleic acid) as well.

-          DNA is our genetic material whereas RNA makes up our genetic code.
                                           
-          DNA is more likely to be found in nucleus and less in cytoplasm.

-          RNA is more likely to be found in cytoplasm and less in nucleus.

-          Upon hydrolysis of DNA three components are obtained: - 
o   Phosphoric acid
                             
o   Pentose sugar
                               
o   Nitrogenous base

NITROGENOUS BASES

-          These are most important constituent of both DNA and RNA.

-          These are classified into two groups based upon their structure: -
o   Purines
o   Pyrimidines

-          PYRIMIDINES

o   It is heterocyclic (a cyclic compound with more than one type of atoms) compound.
o   Pyrimidines constitute of three nitrogenous bases

o   Thymine: -
§  Found only in DNA.
§  Chemical composition C5H6O2N2.

o   Cytosine: -
§  Found both in DNA and RNA.
§  Chemical composition is C4H5ON3.
                             
o   Uracil: -
§  Found only in RNA.
§  Chemical composition is C4H4O2N2.

-          PURINES
o   It is a pyrimidine ring that is attached to another 5-membered ring.
o   Purines constitute of two nitrogenous bases.

o   Adenine: -

§  Found both in DNA and RNA.
§  Chemical composition is C5H5N5.
                    
o   Guanine: -
§  Found both in DNA and RNA.
§  Chemical composition is C5H5ON5.

Pentose sugar

-          It is present in both nucleic acids in two different forms.

-          The two nucleic acids are distinguished primarily on the basis of 5-carbon keto sugar or called ribose.
                                                  
-          DNA has 2-deoxyribose nucleic acid and RNA has ribonucleic acid.
                                         
-          Ribose reacts with orcinol in HCl solution containing FeCl whereas deoxyribose diphenylamine in acidic solution.

-          Compounds containing only nitrogenous bases and pentose sugars are called nucleosides.

-          Nucleotides contain pentose sugar, nitrogenous base and phosphate group.
                                   

Nucleotides

-          These have several functions in the cell

-          Carriers of chemical energy: -
o   Nucleotides with one, two or three phosphate groups are called monophosphate, diphosphate or triphosphate.
o   NTPs (nucleotide triphosphate) are sources of energy in any biochemical reaction.
o   ATP is widely used but other NTPs are used in specific reactions.
                                    
o   Hydrolysis of NTPs releases energy.

-          Enzyme cofactors: -
o   Many enzyme cofactors and coenzymes contain adenosine as part of their structure.
o   Removal of adenosine from the cofactors decreases their activity.
o   Example: - acetyl Co-A.
                               

-          Chemical messenger: -
o   Hormones and chemical signalling agents are called messengers.
o   These messengers induce secondary messengers inside the cells which are generally nucleotides.

DNA (Deoxyribose Nucleic Acid)

-          It is polymer of nucleotide monomers joined by phosphodiester bonds.

-          Purines and Pyrimidines carry genetic information whereas pentose sugar and phosphate group perform structural role.
                                       
-          In a DNA phosphodiester bond is formed between 5’phosphate group of one nucleotide and 3’hydroxyl group of another nucleotide.

-          This contains four nitrogenous bases adenine, guanine, thymine and cytosine.
                                         
-          RNA is similar but it has Uracil in the place of thymine.

Structure of DNA by Watson and Crick model

-          The 3D model of DNA was given by James.D.watson and Fransis.H.crick in 1953.
                                          
-          They said that the DNA is double stranded.

-          The two strands were antiparallel one ran from 5’ to 3’ direction and the other ran from 3’ to 5’ direction.

-          Adenine formed double bonded hydrogen bond with thymine and guanine formed triple bonded hydrogen bond with cytosine.
                                       

-          The two strands of a DNA can be represented as a step ladder folded along its imaginary axis to form a “Double Helix”.

Types of DNA

-          A-DNA
o   Right handed orientation.
o   Found in conditions with low humidity

-          B-DNA
o   Right handed orientation
o   Most dominant form in almost all organisms.
                         
-          Z-DNA
o   Left handed orientation.

o    Its sugar backbones are zigzag in appearance.

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